Enzyme promiscuity: using the dark side of enzyme specificity in white biotechnology
© Arora et al.; licensee Springer. 2014
Received: 27 August 2014
Accepted: 10 December 2014
Published: 31 December 2014
KeywordsEnzyme specificity Catalytic promiscuity Enzymes in organic synthesis Enantioselectivity Green chemistry
“I suspect they put Socrates to death because there is something terribly unattractive, alienating and non-human in thinking with too much clarity.”-
The Bed of Procrustes by Nassim Nicholas Taleb
The basic tenet of white biotechnology is to minimize damage to the environment rather than taking recourse to remediation as an “end of the pipe” solution ,. Enzymes either in isolated form or in the form of whole cells can play an important role because of their two well known virtues. The biocatalysts normally do not require high temperature or other conditions which involve high consumption of energy. The biocatalysts are believed to be fairly specific, which would mean less number of side reactions. Side reactions lead to side products which lower the atom economy of the reactions. These side reactions hence lower the yield of the desired product (making the catalysis less efficient) and necessitate complicated downstream processing.
This review discusses the paradigm shifts over the years in our understanding of the enzyme specificity. It also explains why so called lack of specificity is also a good news as far as the usefulness of enzymes in biotechnology is concerned. The most dramatic departure from the classical concept of enzyme specificity is seen in the phenomenon of catalytic promiscuity. This refers to the same enzyme catalyzing very different kinds of biotransformations -.
Classification of enzymes and enzyme specificity
Most of the people have forgotten (understandable since it disappeared from the standard texts many decades back!) that initially proteins were classified according to their solubility in various solvents. The five classes of proteins were albumins (soluble in water and salt solutions), globulins (sparingly soluble in water but soluble in salt solutions), prolamines (soluble in 70-80% ethanol), glutenins (soluble in acid or alkali) and scleroproteins (insoluble in aqueous solvents) . As our knowledge of proteins grew, the distinction between these various classes became fluid and in fact confusing. The enzymes, in the early phase of biochemistry became the most important and most studied class of proteins. These were named in a random fashion just as people name buildings, streets and monuments. Many of these names persist e.g. catalase, trypsin, lysozyme etc. Many of these names were based upon the nature of their catalytic activity. Lysozyme is named so as it lyses cells. So, the nomenclature and catalytic specificity have a long history in the area of biocatalysis.
The idea of a particular structure being absolutely related to a biological activity has been considered the hallmark of biology for many decades. Hence, it is not surprising that enzyme commission classification was based upon the type of reaction the enzyme catalyzes –hydrolysis, isomerisation or redox reactions etc. . This in retrospect may not have been such a wise move as we believed till now.
In 1955–56, International Commission of enzymes was set up and that is how the EC classification came into being . As we know, this classification provides a number with four figures. It is worth noting that all the four figures relate to the details of the specificity of the enzyme. The firm belief was that if one is able to pin down complete details of the specificity, one has described the enzyme and that is its identity.
Various kinds of enzyme promiscuity
Nothing promotes a scientific direction asmuch as coining a new term. System biology, nanotechnology and synthetic biology are illustrative examples. Enzyme promiscuity is also a case in point. As Hult and Burglund  pointed out, promiscuous catalysis by pyruvate decarboxylase of formation of C-C bonds was reported in 1921 and forms the basis of a current industrial process. Khersonsky and Tawfik  have also cited examples of few other well known enzymes which, many decades back, were reported to catalyse reactions “in addition to the ones for which they are physiologically specialized or evolve…”. As Babtie et al.  highlighted “Promiscuous activities are generally considerably less efficient than the primary function of an enzyme, but second order rate constants (kcat/KM) as high as 105 M−1 s−1 and rate accelerations ((kcat/KM)/k2) up to 1018 have been reported: these values match or exceed those for many native enzymatic reactions.”. After initial loose usages of the terms (associated with promiscuous behaviour of enzymes), there is clarity that broad specificity of an enzyme in terms of catalysis of the same reaction with range of substrates should be called substrate promiscuity. Instances when an enzyme catalyses a different reaction (which is not believed to be physiologically relevant at that point in evolution) with a different transition state should be termed as examples of catalytic promiscuity ,.
Hult and Berglund  go a step further and suggest that reverse reactions catalysed by enzymes in many non-aqueous media or co-solvents can be classified as condition promiscuity. In such cases, the transition state may be same as in normal reactions. So, this may be little confusing.
Enzyme promiscuity started as being perceived as “associated with unwanted side effects, poor catalytic properties and errors in biological function” . Today, it is increasingly being perceived as immensely useful phenomenon which can dramatically enhance utility of biocatalysis in biotechnology.
Babtie et al.  have provided a good discussion on how catalytic promiscuity may operate. Apart from the different amino acids of the active site involved in a qualitative or quantitative fashion during binding of the “alternative substrates”, hydrophobic interactions may have an important role to play. Not only during binding, even during catalytic steps, the contributions of the active site residues may differ qualitatively and/or quantitatively. This “accidental promiscuity” observed in wild forms of the enzymes should be distinguished from “induced promiscuity” exhibited by mutants obtained by protein engineering or directed evolution . Many excellent reviews (other than those already quoted above) which include evolutionary aspects of promiscuity are available ,,.
Condition promiscuity of enzymes
Hydrolases hydrolyse substrates. What happens if water is nearly absent? Advent of non-aqueous enzymology showed that exploring this possibility led to carrying out biocatalysis in nearly anhydrous organic solvents ,, reverse micelles ,, ionic liquids - etc. So, a lipase in low water containing organic solvent synthesizes an ester bond and is obviously not functioning as a hydrolase .
These possibilities have emerged as our classical concept of hydrolases will be always hydrolases turned out to be not absolutely valid. If you change the reaction condition, enzymes show condition promiscuity. That has not turned out to be bad at all from the perspective of white biotechnology.
Catalytic promiscuity: recent results
Some interesting examples of organic compounds synthesized in the authors’ laboratory exploiting catalytic promiscuity
Structure of the compound
Substrate and reaction conditions
Substrate: 5-Hydroxy-endo tricyclo [5.2.1.02,6] deca-4,8-dien-3-one and vinyl acetate
Biocatalyst: Novozyme 435
Solvent: Vinyl acetate (substrate) containing 10 % (v/v) pyridine/DMF
Substrate: p-nitrobenzaldehyde and ethyl acetoacetate
Biocatalyst: Lipases from Candida antarctica lipase B, Mucor javanicus, Mucor miehei, Candida rugosa and Novozyme 435
Solvent: Aqueous organic co-solvent mixtures were used as the solvent
Substrate: p-nitrobenzaldehyde and acetyl acetone
Biocatalyst: Lipases from Candida antarctica lipase B, Mucor javanicus, Mucor miehei, Burkholderia cepacia and Novozyme 435
Solvent: Aqueous organic co-solvent mixtures
Biocatalyst: Novozyme 435
Solvent: Aqueous buffer
Catalytic promiscuity of lipases
Single pot multicomponent reactions are an efficient synthetic strategy especially if accompanied by good atom economy. Zhang  showed that porcine pancreatic lipase (PPL) could be used to synthesize a number of 2, 4-disubstituted thiazoles with methanol as the organic solvent. Their interest in synthesis of these compounds was due to their many biological activities. There are several noteworthy features of this work. Use of organic solvents (as compared to water or aqueous-organic co-solvent mixtures) has been underexploited in the context of catalytic promiscuity of enzymes. More important, some amylase preparations have also been shown to be catalysing this reaction. It is very likely that enzymes used in this work were industrial grade preparations and may have been contaminated by lipase activities. Earlier, it took several decades before Nakajima’s group could show that lipases (contrary to an earlier claim) if purified do not catalyse peptide synthesis in organic solvents . As we explore more and more catalytic promiscuity of enzymes, it is necessary that we keep in mind that some of these may be caused by contaminating proteins. Another important point is that methanol as a solvent was far superior to ethanol. That is unfortunate as ethanol, unlike methanol, is a green solvent. So, from sustainability point of view, perhaps we need to separately screen out a panel of green solvents and determine which one is the best, even if not as good as another non green solvent.
Ugi reaction is one of the more well known multicomponent reactions . The classic Ugi reaction involves condensation of a primary amine, a carbonyl compound, carboxylic acid and isocyanide. Kzossowski et al.  have shown that Novozym 435 could form a peptide bond in organic solvents like toluene and chloroform. An important objective of white biotechnology has been to be able to operate chemical processes starting with simple set of compounds  which can be obtained from renewable resources. In that respect, peptide bond formation starting with an amine, aldehyde and isocyanide (rather than two amino acids) is a good advancement and shows the wide ranging promise and potential of catalytic promiscuity.
Catalytic promiscuity: beyond lipases
The phenomenon of catalytic promiscuity has turned out to be far more widespread than initially believed. While earlier, there was a strong focus on the use of lipases for C-C bond formation reactions ,,,,, use of other enzymes in catalyzing diverse kinds of reactions is being increasingly demonstrated. Liu et al.  have reported asymmetric aldol reactions between isatin derivatives with cyclic ketones catalyzed by nuclease p1 from Penicillium citrinum. This example of catalytic promiscuity provides a green approach for the synthesis of pharmaceutically active compounds. Li et al.  had earlier used the same enzyme for catalyzing asymmetric aldol reactions between aromatic aldehydes and cyclic ketones under solvent-free conditions. The catalytic promiscuity of Escherichia coli BioH esterase was recently exploited for the synthesis of 3, 4-dihydropyran derivatives . The authors used a series of substituted benzalacetones and 1, 3-cyclic diketones as reactants in anhydrous DMF, with yields as high as 76% being obtained in some cases. Recently, ficin from fig tree latex (a plant cysteine proteinase) was shown to catalyze the direct asymmetric aldol reactions of nitrogen, oxygen or sulphur containing heterocyclic ketones with aromatic aldehydes in organic medium . Earlier work from the same group showed that commercially available papain (from Carica papaya latex) can be used as an efficient catalyst for Knoevenagel reactions involving a wide range of substrates . Zheng et al.  developed the trypsin catalyzed one-pot multicomponent synthesis of 4-thiazolidinones as a novel strategy for the synthesis of this important group of heterocyclic compounds. The derivatives of 2H-1-benzopyran-2-one form the scaffold of many pharmaceuticals ,. Wang et al.  have used an alkaline protease from B. licheniformis to obtain these by domino Knoevanagel/intramolecular transesterification reactions in low water containing organic solvents.
An interesting example of exploiting catalytic promiscuity for carrying out domino, single-pot reactions was reported by Zhou et al. . The authors used α-amylase from Bacillus subtilis for catalyzing the oxa-Michael/aldol condensation for the synthesis of substituted chromene derivatives. Gao et al.  described Henry reactions catalyzed by glucoamylase from Aspergillus niger. The reactions carried out in mixed solvents of ethanol and water, formed the β-nitroalcohols in yields upto 99%.
One emerging concern has been the bacteria developing resistance towards existing antibiotics like in the case of aminoglycosides which are broad spectrum antibiotics . The catalytic promiscuity of aminoglycoside acetyl transesterases was utilized for chemoenzymatic synthesis of variety of novel molecules including acylated aminoglucosides which show promise in circumventing bacterial resistance towards existing antibiotics. The synthetic strategy avoids longer multistep processes. Werneburg et al.  have used the polyketide synthetase for preparative scale synthesis of 15 new aureothin (a shikimate-polyketide with antimicrobial and antitumor activities) analogs, many with less cytotoxicity but improved anti-proliferative action. It may be noted that engineered mutants of the organism were used. So, it is an example of metabolic engineering wherein the strategy was based upon the catalytic promiscuity of the enzyme.
Alcohol dehydrogenases (ADHs) are enzymes which catalyze the transformation of ketones/aldehydes to the corresponding alcohols and vice versa at the expense of a nicotinamide cofactor that acts as hydride donor and acceptor respectively . Of the many approaches available for co-factor recycling, a simple way is to use a co-substrate such as propanol ,. Gotor’s group  has used ADHs from L. brevis, R.ruber and Thermoanaerobacter sp. to carry out regioselective and stereoselective reductions of 1, 2-and 1,3- diketones to obtain enantiopure hydroxyketones or diols. Some cyclic diketones were also reduced. The co-substrate propanol was used for co-factor regeneration in this case as well. While the reaction carried out was essentially a normal one, the binding modes of the substrates were different with different ADHs and show how different parts of the active site of the enzymes can be involved in binding. This is a good illustration of substrate promiscuity being exploited for designing useful synthetic strategies. An interesting example of catalytic chemo-promiscuity of alcohol dehydrogenase was reported by Ferreira-Silve et al. . The authors observed that some alcohol dehydrogenases transformed phenylacetaldoxime to the primary alcohol via the imine and aldehyde intermediates, suggesting that the hydride of the co-factor was transferred to the N-atom of the oxime moiety rather than the C-atom.
Alanine racemase is a key PLP-dependant enzyme in cyclosporine (a well known immunosuppressant drug) biosynthesis. Di Salvo et al.  reported that just like serine hydroxymethyl transferase and threonine aldolase, the cloned racemase was able to carry out both retroaldol cleavage and transamination reactions. It is a strong evidence that these three enzymes illustrate divergent evolution from a common ancestor which perhaps singly performed all these individual reactions. So, the specialised functions evolved but the enzymes retained features which are responsible for the promiscuous behaviour.
A novel protocol for the D-aminoacylase catalyzed double Michael addition was developed by Chen et al. . The reactions, which were used for the synthesis of (hetero)spiro[5.5] undecane derivatives produced the cis isomers in all the cases. Grulich et al.  provide a useful summary of the applications of Penicillin G acylases which are known to catalyse transesterifications, Markonikov additions or Henry reactions. Unfortunately, the catalytic efficiency reported so far in these promiscuous reactions is far from satisfactory for any biotechnological applications. However, as Nobeli et al.  had pointed out, such results lay the foundation of subsequent efforts using protein engineering/ directed evolution to improve upon these catalytic activities. Large number of successful results which prove this are already available in the literature ,-.
He et al.  reported for the first time that hen egg white lysozyme (HEWL) efficiently promotes the one-pot, three-component aza-Diels-Alder reaction of aromatic aldehydes, aromatic amine and 2-cyclohexen-1-one. Under optimised conditions, yields up to 98% and stereoselectivity of endo/exo ratios up to 90:10 were obtained.
Applications of catalytic promiscuity for useful biotransformations
Regio- and stereoselective reductions
ADHs from Lactobacillus kefir, Rhodococcus ruber, Thermoanaerobacter etc.
ADHs from Rhodococcus ruber, Ralstonia sp., Thermoanaerobacter etc.
4-chlorobenzaldehyde, cyclohexenone, 4-anisidine
Hen egg white lysozyme (HEWL)
Domino Knoevenagel/intramolecular transesterification
Salicylaldehyde, ethyl acetoacetate
Alkaline protease from Bacillus licheniformis (BLAP)
Guaifenesin, vinyl acetate
Penicillin G acylase
Aromatic aldehyde, acetyl acetone/Ethyl acetoacetate
Papain from Carica papaya latex
Ugi reaction for peptide synthesis (MCR)*
Aldehyde, amine, isocyanide
Novozyme 435 (commercially available, immobilized Candida antarctica lipase B)
Asymmetric aldol reaction
Aromatic aldehyde, cyclic ketone
Nuclease p1 from Penicillium citrinum
Asymmetric aldol reaction
Heterocyclic ketone, aromatic aldehyde
Ficin from fig tree latex
Synthesis of 4-thiazolidinones
Aromatic aldehyde, benzyl amine, mercaptoacetic acid
Trypsin from porcine pancreas
Domino oxa-Michael/aldol condensations
Salicylaldehyde, methyl vinyl ketone
α-amylase from Bacillus subtilis
Glucoamylase from Aspergillus niger (AnGA)
Retro aldol and transamination reactions
L-threonine and L-allo-threonine (for retro aldol reaction); D- and L-alanine(for transamination reaction)
Alanine racemase from Tolypocladium inflatum
Double Michael addition reaction
Cyclohexane-1,3-dione and (1E,4E)-1,5-diphenylpenta-1,4-dien-3-one
Enantioselective aldol reaction
Isatin derivatives, cyclic ketones
Nuclease p1 from Penicillium citrinum
Synthesis of 2,4-disubstituted thiazoles (MCR)*
Benzylamine, isobutyraldehyde, thioacetic acid, methyl 3-(dimethylamino)-2-isocyanoacrylate
Porcine pancreatic lipase (PPL)
Michael addition-cyclization cascade reaction
Substituted benzalacetones and 1,3-cyclic diketones
E.coli BioH esterase
Synthesis of substituted 2H-chromemes (MCR)*
Salicylaldehyde, acetophenone, methanol
Porcine pancreatic lipase
p-nitrobenzaldehyde and methyl vinyl ketone
E.coli BioH esterase
Biginelli reaction (MCR)*
Urea, ethyl acetoacetate, vinyl acetate
Trypsin from porcine pancreas
Archae constitute the oldest organisms on our earth. Given the harsher conditions prevalent in those days, archae are prominent examples of extremophiles. The specialised functions of the enzymes (part of the evolved metabolism) in more complex organism have evolved from the small number of enzymes which these ancestors had. So, these organisms constitute valuable systems to track extensive promiscuity shown by the early enzymes. Jia et al. have detailed both promiscuity as well as moonlighting shown by archae enzymes . Archae enzymes are rich in intrinsic disorder. Jia et al.  point out that capacity for the structure to survive under harsh conditions and multitasking (which is seen as promiscuity and moonlighting) required conformational pliability. It is interesting that many “hub proteins” important in metabolic regulations in many organisms have been found to be intrinsically disordered proteins (IDPs) . So, promiscuity is one facet of the evolutionary design of enzymes. As Skolnick et al.  state, promiscuous behaviour is the biochemical noise (low level, ligand-protein interactions) which was nearly impossible to eliminate as enzyme molecules evolved to assume specialised catalytic roles.
The example of glutathione transferase is especially interesting. Atkins group  have discussed that two isoforms of glutathione transfereases in humans vastly differ in their catalytic promiscuity. This highlights the conceptual relationship between the phenomenon of isoenzymes to promiscuous behaviour as pointed out by one of us few years back . The A-class GSTA1-1 showed the fairly wide substrate specificity as a detoxification enzyme. On the other hand, GSTA4-4 acted upon lipid peroxidation products. This was one of the early reports to point out that “conformational plasticity” is inbuilt to achieve catalytic promiscuity at the cost of stability . More recent work from the same group  concludes that smooth barrier free transitions within the local conformational landscape of the active site is associated with the more promiscuous GST. Furthermore, local molten globule behaviour optimizes the catalytic function of the GST in detoxification . So, catalytic promiscuity may not be just accidental “noise”  but part of an intentional biocatalytic design.
Labrou’s group  have recently reported a GST from A. tumefaciens which represents a novel class of bacterial GST superfamily. Its active site is quite different from cytosolic GST reported so far. It may be interesting to see the unravelling of its specificity in the years to come. Finally, as pointed out by them, GSTs are also possibly involved in the storage and transportation of wide variety of biological molecules and thus are also moonlighting proteins. This three way correlation between isoenzymes, promiscuous enzymes and moonlighting proteins have been pointed out earlier . To sum up, the conformational pliability may be local or global in protein structure as the cause behind promiscuity.
Few trends are clear. While during early few years, examples of catalytic promiscuity were mostly concerned with applications of lipases; last few years have seen other classes of enzymes (other hydrolases, oxidoreductases, transferases etc.) being equally capable of showing catalytic promiscuity.
The shift from our belief in enzyme specificity to the realization that these biocatalysts are fairly promiscuous has not been gradual. Some key milestones can be identified. We accepted the idea of broad specificity (lately called relaxed specificity) long ago. Isoforms or isoenzymes, the enzymes from the same organism, carrying similar catalytic activity but with different specificity and kinetic behaviour have been again known since several decades . The catalysis starts with molecular recognition of the “substrate” by the enzyme. The binding site, part of the active centre was known to show promiscuous behaviour when textile dyes emerged as powerful affinity ligands . The catalytic promiscuity largely arises because many different “substrates” can interact with different side chains of amino acids to result in different transition states.
This is akin to a general practitioner becoming a specialist in medical science but retaining enough knowledge of how to treat many diseases. In the beginning, we had RNA world . Then came early enzymes. As complex metabolisms were required with evolution of more complex organisms, more specialised enzymes emerged. These enzymes did not forget entirely what their ancestors were capable of.
White biotechnology can definitely profit by exploiting many of the catalytic powers which enzymes did not entirely “forget”! This overview has looked at the proverbial “tip of the iceberg”. Hopefully, it will draw attention of many biotechnologists to look at the huge iceberg of potential application of these green catalysts to nurture sustainable approaches in chemical industries.
We thank Prof. Prashant Mishra for his interest in this work and several related discussions. We acknowledge financial support from the Government of India’s Department of Science and Technology (DST) [Grant No.: SR/SO/BB-68/2010]. BA and JM thank the Council of Scientific and Industrial Research for the Senior Research Fellowship.
- Gupta MN, Raghava S: Relevance of chemistry to white biotechnology. Chem Cent J. 2007, 1: 17-10.1186/1752-153X-1-17.View ArticleGoogle Scholar
- Ulber R, Sell D: White Biotechnology. 2007, Springer-Verlag, BerlinView ArticleGoogle Scholar
- Kazlauskas RJ: Enhancing catalytic promiscuity for biocatalysis. Curr Opin Chem Biol. 2005, 9: 195-201. 10.1016/j.cbpa.2005.02.008.View ArticleGoogle Scholar
- Khersonsky O, Tawfik DS: Enzyme promiscuity: a mechanistic and evolutionary perspective. Annu Rev Biochem. 2010, 79: 471-505. 10.1146/annurev-biochem-030409-143718.View ArticleGoogle Scholar
- Gupta MN, Kapoor M, Majumder AB, Singh V: Isozymes, moonlighting proteins and promiscous enzymes. Curr Sci. 2011, 100: 1152-1162.Google Scholar
- Gupta MN, Mukherjee J: Enzymology: some paradigm shifts over the years. Curr Sci. 2013, 104: 1178-1186.Google Scholar
- Fruton JS, Simmons S: General Biochemistry. 1958, Wiley and Sons Inc, New YorkGoogle Scholar
- Dixon M, Webb EC: Enzymes. 1964, Academic Press, LondonGoogle Scholar
- Hult K, Berglund P: Enzyme promiscuity: mechanism and applications. Trends Biotechnol. 2007, 25: 231-238. 10.1016/j.tibtech.2007.03.002.View ArticleGoogle Scholar
- Babtie A, Tokuriki N, Hollfelder F: What makes an enzyme promiscuous. Curr Opin Chem Biol. 2010, 14: 1-8. 10.1016/j.cbpa.2009.11.028.View ArticleGoogle Scholar
- Nobeli I, Favia AD, Thornton JM: Protein promiscuity and its implications for biotechnology. Nat Biotechnol. 2009, 27: 157-167. 10.1038/nbt1519.View ArticleGoogle Scholar
- Goldsmith M, Tawfik DS: Directed enzyme evolution: beyond the low-hanging fruit. Curr Opin Struc Biol. 2012, 22: 406-412. 10.1016/j.sbi.2012.03.010.View ArticleGoogle Scholar
- O’Brien PJ, Herschlag D: Catalytic promiscuity and the evolution of new enzymatic activities. Chem Biol. 1999, 6: R91-R105. 10.1016/S1074-5521(99)80033-7.View ArticleGoogle Scholar
- Humble MS, Berglund P: Biocatalytic promiscuity. Eur J Org Chem. 2011, 2011: 3391-3401. 10.1002/ejoc.201001664.View ArticleGoogle Scholar
- Gupta MN: Enzyme function in organic solvents. Eur J Biochem. 1992, 203: 25-31. 10.1111/j.1432-1033.1992.tb19823.x.View ArticleGoogle Scholar
- Vulfson EN, Halling PJ, Holland HL: Enzymes in Nonaqueous Solvents: Methods and Protocol. 2001, Humana Press, New JerseyView ArticleGoogle Scholar
- Martinek K, Levashov AV, Klyachko N, Khmelnitsky YL, Berezin IV: Micellar enzymology. Eur J Biochem. 1986, 155: 453-468. 10.1111/j.1432-1033.1986.tb09512.x.View ArticleGoogle Scholar
- Martinek K, Berezin IV, Khmelnitsky YL, Klyachko NL, Levashov AV: Enzymes entrapped into reversed micelles of surfactants in organic solvents: key trends in applied enzymology (Biotechnology). Biocatal Biotransform. 1987, 1: 9-15. 10.3109/10242428709040126.View ArticleGoogle Scholar
- Park S, Kazalauskas RJ: Improved preparation and use of room temperature ionic liquids in lipase-catalyzed enantio- and regioselective acylations. J Org Chem. 2001, 66: 8395-8401. 10.1021/jo015761e.View ArticleGoogle Scholar
- Park S, Kazalauskas RJ: Biocatalysis in ionic liquids – advantages beyond green technology. Curr Opin Biotechnol. 2003, 14: 432-437. 10.1016/S0958-1669(03)00100-9.View ArticleGoogle Scholar
- Shah S, Gupta MN: Kinetic resolution of (±)-1-phenylethanol in [Bmim][PF6] using high activity preparations of lipases. Bioorg Med Chem Lett. 2007, 17: 921-924. 10.1016/j.bmcl.2006.11.057.View ArticleGoogle Scholar
- Zhao H: Methods for stabilizing and activating enzymes in ionic liquids—a review. J Chem Technol Biotechnol. 2010, 85: 891-907. 10.1002/jctb.2375.View ArticleGoogle Scholar
- Kumari V, Shah S, Gupta MN: Preparation of biodiesel by lipase-catalyzed transesterification of high free fatty acid containing oil from madhuca indica. Energy Fuels. 2007, 21: 368-372. 10.1021/ef0602168.View ArticleGoogle Scholar
- Gupta MN: Methods in non-Aqueous Enzymology. 2000, Birkhauser Verlag, BaselView ArticleGoogle Scholar
- Laane C: Medium engineering for bioorganic synthesis. Biocatalysis. 1987, 30: 80-87.Google Scholar
- Gupta MN, Roy I: Enzymes in organic media: forms, function and applications. Eur J Biochem. 2004, 271: 2575-2583. 10.1111/j.1432-1033.2004.04163.x.View ArticleGoogle Scholar
- Wu SH, Chu FY, Wang KT: Reversible enantioselectivity of enzymatic reactions by media. Bioorg Med Chem Lett. 1991, 1: 339-342. 10.1016/S0960-894X(01)80467-4.View ArticleGoogle Scholar
- Tsai S, Huang CM: Enantioselective synthesis of (S)-ibuprofen ester prodrugs by lipases in cyclohexane. Enzyme Microb Technol. 1999, 25: 682-688. 10.1016/S0141-0229(99)00108-8.View ArticleGoogle Scholar
- Khmelnitsky YL, Mozhaev VV, Belova AB, Sergeeva MV, Martinek K: Denaturation capacity: a new quantitative criterion for selection of organic solvents as reaction media in biocatalysis. Eur J Biochem. 1991, 198: 31-41. 10.1111/j.1432-1033.1991.tb15983.x.View ArticleGoogle Scholar
- Mattiasson B, Holst O: Extractive Bioconversions. 1991, Marcel Dekker Inc, New YorkGoogle Scholar
- Purich DL: Enzyme Kinetics: Catalysis & Control. 2010, Academic Press, LondonGoogle Scholar
- Asuri P, Karajanagi S, Dordick JS, Kane R: Directed assembly of carbon nanotubes at liquid-liquid interfaces: nanoscale conveyors for interfacial biocatalysis. J Am Chem Soc. 2006, 128: 1046-1047. 10.1021/ja0573965.View ArticleGoogle Scholar
- Ayres BT, Valenca GP, Franco TT: Two-step process for preparation of oligosaccharide propionates and acrylates using lipase and Cyclodextrin Glycosyl Transferase (CGTase). Sus Chem Processes. 2014, 2: 6-10.1186/2043-7129-2-6.View ArticleGoogle Scholar
- Boodhoo K, Harvey A: Process Intensification for Green Chemistry. 2013, Wiley and Sons Ltd, LondonView ArticleGoogle Scholar
- Luque R, Clark JH: Valorisation of food residues: waste to wealth using green chemical technologies. Sus Chem Processes. 2013, 1: 10-10.1186/2043-7129-1-10.View ArticleGoogle Scholar
- Pleissner D, Lin CS: Valorisation of food waste in biotechnological processes. Sus Chem Processes. 2013, 1: 21-10.1186/2043-7129-1-21.View ArticleGoogle Scholar
- Banerjee A, Singh V, Solanki K, Mukherjee J, Gupta MN: Combi-protein coated microcrystals of lipases for production of biodiesel from oil from spent coffee grounds. Sust Chem Processes. 2013, 1: 14-10.1186/2043-7129-1-14.View ArticleGoogle Scholar
- Busto E, Gotor-Fernandez V, Gotor V: Hydrolases: catalytically promiscuous enzymes for non-conventional reactions in organic synthesis. Chem Soc Rev. 2010, 39: 4504-23. 10.1039/c003811c.View ArticleGoogle Scholar
- Kapoor M, Gupta MN: Lipase promiscuity and its biochemical applications. Process Biochem. 2012, 47: 555-569. 10.1016/j.procbio.2012.01.011.View ArticleGoogle Scholar
- Majumder AB, Ramesh NG, Gupta MN: Lipase catalyzed condensation reaction with a tricyclic diketone-yet another example of biocatalytic promiscuity. Tetrahedron Lett. 2009, 50: 5190-5193. 10.1016/j.tetlet.2009.06.108.View ArticleGoogle Scholar
- Kapoor M, Majumder AB, Mukherjee J, Gupta MN: Decarboxylative aldol reaction catalysed by lipases and a protease in organic co-solvent mixtures and nearly anhydrous organic solvent media. Biocatal Biotransform. 2012, 30: 399-408. 10.3109/10242422.2012.703181.View ArticleGoogle Scholar
- Majumder AB, Gupta MN: Lipase-catalyzed condensationreaction of 4-nitrobenzaldehyde with acetyl acetone in aqueous–organic cosolvent mixtures and in nearly anhydrous media. Synth Commun. 2014, 44: 818-826. 10.1080/00397911.2013.834059.View ArticleGoogle Scholar
- Arora B, Pandey PS, Gupta MN: Lipase catalyzed Cannizzaro-type reaction with substituted benzaldehydes in water. Tetrahedron Lett. 2014, 55: 3920-3922. 10.1016/j.tetlet.2014.05.022.View ArticleGoogle Scholar
- Zhang H: A novel one-pot multicomponent enzymatic synthesis of 2,4-disubstituted thiazoles. Catal Lett. 2014, 144: 928-934. 10.1007/s10562-014-1229-1.View ArticleGoogle Scholar
- Maruyama T, Nakajima M, Kondo H, Kawasaki K, Seki M, Goto M: Can lipases hydrolyse a peptide bonds?. Enzym Microb Technol. 2003, 32: 655-657. 10.1016/S0141-0229(03)00053-X.View ArticleGoogle Scholar
- Domling A, Ugi I: Multicomponent reactions with isocyanides. Angew Chem Int Ed. 2000, 39: 3168-3210. 10.1002/1521-3773(20000915)39:18<3168::AID-ANIE3168>3.0.CO;2-U.View ArticleGoogle Scholar
- Kzossowski S, Wiraszka B, Berzozecki S, Ostaszewski R: Model studies on the first enzyme-catalyzed Ugi reaction. Org Lett. 2013, 15: 566-569. 10.1021/ol3033829.View ArticleGoogle Scholar
- Branneby C, Carlqvist P, Magnusson A, Hult K, Brinck T, Berglund P: Carbon–carbon bonds by hydrolytic enzymes. J Am Chem Soc. 2003, 125: 874-875. 10.1021/ja028056b.View ArticleGoogle Scholar
- Li C, Feng X-W, Wang N, Zhou Y-J, Yu X-Q: Biocatalytic promiscuity: the first lipase catalysed asymmetric aldol reaction. Green Chem. 2008, 10: 616-618. 10.1039/b803406k.View ArticleGoogle Scholar
- Liu ZQ, Xiang ZW, Shen Z, Wu Q, Lin XF: Enzymatic enantioselective aldol reactions of isatin derivatives with cyclic ketones under solvent free conditions. Biochimie. 2014, 101: 156-160. 10.1016/j.biochi.2014.01.006.View ArticleGoogle Scholar
- Li HH, He YH, Yuan Y, Guan Z: Nuclease p1: a new biocatalyst for direct asymmetric aldol reaction under solvent-free conditions. Green Chem. 2011, 13: 185-189. 10.1039/c0gc00486c.View ArticleGoogle Scholar
- Jiang L, Wang B, Li R, Shen S, Yu H, Ye L: Catalytic promiscuity of Escherichia coli BioH esterase: application in the synthesis of 3,4-dihydropyran derivatives. Process Biochem. 2014, 49: 1135-1138. 10.1016/j.procbio.2014.03.020.View ArticleGoogle Scholar
- Fu JP, Gao N, Yang Y, Guan Z, He YH: Ficin-catalyzed asymmetric aldol reactions of heterocyclic ketones with aldehydes. J Mol Catal B Enzym. 2013, 97: 1-4. 10.1016/j.molcatb.2013.06.016.View ArticleGoogle Scholar
- Hu W, Guan Z, Deng X, He YH: Enzyme catalytic promiscuity: the papain-catalyzed Knoevenagel reaction. Biochemie. 2012, 94: 656-661. 10.1016/j.biochi.2011.09.018.View ArticleGoogle Scholar
- Zheng H, Mei YJ, Du K, She QI, Zhang PF: Trypsin catalysed one-pot multicomponent synthesis of 4-thiazolidinones. Catal Lett. 2013, 143: 298-301. 10.1007/s10562-013-0962-1.View ArticleGoogle Scholar
- Chun K, Park SK, Kim HM, Choi Y, Kim MH, Park CH, Joe BY, Chun PG, Choi HM, Lee HY, Hong SH, Kim MS, Nam KY, Han G: Chromen-based TNF-α-converting enzyme (TACE) inhibitors: design, synthesis and biological evaluation. Bioorg Med Chem Lett. 2008, 16: 530-535. 10.1016/j.bmc.2007.09.014.View ArticleGoogle Scholar
- Khode S, Maddi V, Aragade P, Palkar M, Ronad PK, Mamledesai S, Thippeswamy AHM, Satyanarayana D: Synthesis and pharmacological evaluation of a novel series of 5-(substituted)-aryl-3-(3-coumarinyl)-1-phenyl-2-pyrazolines as novel anti-inflammatory and analgesic agents. Eur J Med Chem. 2009, 44: 1682-1688. 10.1016/j.ejmech.2008.09.020.View ArticleGoogle Scholar
- Wang CH, Guan Z, He YH: Biocatalytic domino reaction: synthesis of 2H-1-benzopyran-2-one derivatives using alkaline protease from Bacillus licheniformis. Green Chem. 2011, 13: 2048-2054. 10.1039/c0gc00799d.View ArticleGoogle Scholar
- Zhou LH, Wang N, Zhang W, Xie ZB, Yu XQ: Catalytical promiscuity of α- amylase: synthesis of 3-substituted 2H-chromene derivatives via biocatalytic domino oxa-Michael/aldol condensations. J Mol Catal B Enzym. 2013, 91: 37-43. 10.1016/j.molcatb.2013.02.001.View ArticleGoogle Scholar
- Gao N, Chen YL, He YH, Guan Z: Highly efficient and large-scalable glucoamylase catalyzed Henry reactions. RSC Adv. 2013, 3: 16850-16856. 10.1039/c3ra41287c.View ArticleGoogle Scholar
- Green KD, Chen W, Houghton JL, Fridman M, Garneau-Tsodikova S: Exploring the substrate promiscuity of drug modifying enzymes for the chemoenzymatic generation of N-acylated amino glycosides. ChemBioChem. 2010, 11: 119-126. 10.1002/cbic.200900584.View ArticleGoogle Scholar
- Werneburg M, Busch B, He J, Richter MEA, Xiang L, Moore BS, Roth M, Dahse HM, Hertweck C: Exploiting enzymatic promiscuity to engineer a focussed library of highly selective antifungal and anti proliferative aureothin analogs. J Am Chem Soc. 2010, 132: 10407-10413. 10.1021/ja102751h.View ArticleGoogle Scholar
- Kula MR, Kragl U: Dehydrogenases in the synthesis of chiral compounds. Stereoselective Biocatalysis. Edited by: Patel RN. 2000, Marcel Dekker Inc, New York, 839-866. 10.1201/9781420027242.ch28.View ArticleGoogle Scholar
- Van der Donk WA, Zhao H: Recent developments in pyridine nucleotide regeneration. Curr Opin Biotechnol. 2003, 14: 421-426. 10.1016/S0958-1669(03)00094-6.View ArticleGoogle Scholar
- Kroutil W, Mang H, Edegger K, Faber K: Recent advances in the biocatalytic reduction of ketones and oxidation of sec-alcohols. Curr Opin Chem Biol. 2004, 8: 120-126. 10.1016/j.cbpa.2004.02.005.View ArticleGoogle Scholar
- Kurina-Sanz M, Bisogno FR, Lavandera I, Orden AA, Gotor V: Promiscuous substrate binding explains the enzymatic stereo and regiocontrolled synthesis of enantiopure hydroxyl ketones and diols. Adv Synth Catal. 2009, 351: 1842-1848. 10.1002/adsc.200900218.View ArticleGoogle Scholar
- Ferreira-Silve B, Lavandra I, Kern A, Faber K, Kroutil W: Chemo-promiscuity of alcohol dehydrogenases: reduction of phenylacetaldoxime to the alcohol. Terahedron. 2010, 66: 3410-3414. 10.1016/j.tet.2010.03.050.View ArticleGoogle Scholar
- di Salvo ML, Florio R, Paiardini A, Vivoli M, D’Aguanno M, Contestabile R: Alanine racemase from Tolypocladium inflatum: a key PLP-dependent enzyme in cyclosporine biosynthesis and a model of catalytic promiscuity. Arch Biochem Biophys. 2013, 529: 55-65. 10.1016/j.abb.2012.11.011.View ArticleGoogle Scholar
- Chen XY, Liang YR, Xu FL, Wu Q, Lin XF: Stereoselective synthesis of spiro[5.5]undecane derivatives via biocatalytic [5 + 1] double Michael additions. J Mol Catal B Enzym. 2013, 97: 18-22. 10.1016/j.molcatb.2013.07.012.View ArticleGoogle Scholar
- Grulich M, Stepanek V, Kyslik P: Perspectives and industrial potential of PGA selectivity and promiscuity. Biotechnol Adv. 2013, 31: 1458-1472. 10.1016/j.biotechadv.2013.07.005.View ArticleGoogle Scholar
- Soskine M, Tawfik DS: Mutational effects and the evolution of new protein functions. Nature Rev Genet. 2010, 11: 572-582. 10.1038/nrg2808.View ArticleGoogle Scholar
- Meier MM, Rajendran C, Malisi C, Fox NG, Xu C, Schlee S, Barondeau DP, Hocker B, Sterner R, Raushel FM: Molecular engineering of organophosphate hydrolysis activity from a weak promiscuous lactonase template. J Am Chem Soc. 2013, 135: 11670-11677. 10.1021/ja405911h.View ArticleGoogle Scholar
- Jung S, Kim J, Park S: Rational design for enhancing promiscuous activity of Candida antarctica lipase B: a clue for the molecular basis of dissimilar activities between lipase and serine-protease. RSC Adv. 2013, 3: 2590-2594. 10.1039/c2ra23333a.View ArticleGoogle Scholar
- He YH, Hu W, Guan Z: Enzyme catalysed direct three component Aza Diels Alder reaction using hen egg white lysozyme. J Org Chem. 2012, 77: 200-207. 10.1021/jo2016696.View ArticleGoogle Scholar
- Baas BJ, Zandvoort E, Geertsema EM, Poelarends GJ: Recent advances in the study of enzyme promiscuity in the tautomerase super family. ChemBioChem. 2013, 14: 917-926. 10.1002/cbic.201300098.View ArticleGoogle Scholar
- Jarvo ER, Miller SJ: Amino acids and peptides as asymmetric organocatalysts. Tetrahedron. 2002, 58: 2481-2495. 10.1016/S0040-4020(02)00122-9.View ArticleGoogle Scholar
- Notz W, Tanaka F, Barbas CF: Enamine-based organocatalysis with proline and diamines: the development of direct catalytic asymmetric aldol, Mannich, Michael and Diels-Alder reactions. Acc Chem Res. 2004, 37: 580-591. 10.1021/ar0300468.View ArticleGoogle Scholar
- Liu B, Wu Q, Lv D, Lin X: Modulating the synthetase activity of penicillin G acylase in organic media by addition of N-methylimidazole: using vinyl acetate as activated acyl donor. J Biotechnol. 2011, 153: 111-115. 10.1016/j.jbiotec.2011.03.009.View ArticleGoogle Scholar
- Yang F, Wang Z, Wang H, Zhang H, Yue H, Wang L: Enzyme catalytic promiscuity: lipase catalyzed synthesis of substituted 2H-chromenes by a three-component reaction. RSC Adv. 2014, 4: 25633-25636. 10.1039/c4ra03367a.View ArticleGoogle Scholar
- Jiang L, Yu HW: An example of enzymatic promiscuity: the Baylis-Hillman reaction catalyzed by a biotin esterase (BioH) from Escherichia coli . Biotechnol Lett. 2014, 36: 99-103. 10.1007/s10529-013-1329-9.View ArticleGoogle Scholar
- Xie ZB, Wang N, Wu WX, Le ZG, Yu XQ: Trypsin-catalyzed tandem reaction: one-pot synthesis of 3,4-dihydropyrimidin-2(1H)-ones by in situ formed acetaldehyde. J Biotechnol. 2014, 170: 1-5. 10.1016/j.jbiotec.2013.10.031.View ArticleGoogle Scholar
- Jia B, Cheong GW, Zhang S: Multifunctional enzymes in archaea: promiscuity and moonlight. Extremophiles. 2013, 17: 193-203. 10.1007/s00792-012-0509-1.View ArticleGoogle Scholar
- Mittag T, Kay LE, Forman-Kay JD: Protein dynamics and conformational disorder in molecular recognition. J Mol Recognit. 2010, 23: 105-116.Google Scholar
- Skolnick J, Gao M: Interplay of physics and evolution in the likely origin of protein biochemical function. Proc Natl Acad Sci. 2013, 110: 9344-9349. 10.1073/pnas.1300011110.View ArticleGoogle Scholar
- Hou L, Honaker MT, Shireman LM, Balogh LM, Roberts AG, Ng K, Nath A, Atkins WM: Functional promiscuity correlates with conformational heterogeneity in A-class glutathione S-transferases. J Biol Chem. 2007, 282: 23263-23274.Google Scholar
- Honaker MT, Acchione M, Sumida JP, Atkins WM: Ensemble perspective for catalytic promiscuity: calorimetric analysis of the active site conformational landscape of a detoxification enzyme. J Biol Chem. 2011, 286: 42769-42776. 10.1074/jbc.M111.304386.View ArticleGoogle Scholar
- Honaker MT, Acchione M, Zhang W, Mannervik B, Atkins WM: Enzymatic detoxification, conformational selection, and the role of molten globule active sites. J Biol Chem. 2013, 288: 18599-18611. 10.1074/jbc.M112.445767.View ArticleGoogle Scholar
- Skopelitou K, Dhavala P, Papageorgiou AC, Labrou NE: A glutathione transferase from Agrobacterium tumefaciens reveals a novel class of bacterial GST superfamily. PLoS ONE. 2012, 7: e34263-10.1371/journal.pone.0034263.View ArticleGoogle Scholar
- Labrou NE: Affinity chromatography. Methods for Affinity-Based Separations of Enzymes and Proteins. Edited by: Gupta MN. 2002, Birkhauser Verlag, Basel, 16-28. 10.1007/978-3-0348-8127-2_2.View ArticleGoogle Scholar
- Watson JD, Hopkins NH, Roberts JW, Steitz JA, Weiner AM: Molecular Biology of the Gene. 1987, The Benjamin/Cummings Publishing Company Inc, California, fourthGoogle Scholar
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.